Genome Statistics

- The overall statistics of genome assembly and annotation of ten Camellia plants are shown as below.

Genome Genome size (Gb) N50 of contigs (kb) Longest contigs (bp) N50 of scaffolds (Mb) GC content (%) Average gene length (bp) Gene density (per Mb) Average CDS length (bp) Average exon length (bp) Repeat sequence length (Gb) LAI score
Yunkang10 2.57 19.96 164,396 0.5 39.62 3,290 14.35 990 237 1.75 5.29
Shuchazao(v1) 2.89 67.07 538,748 1.39 37.84 6,821 11.72 1,345 238 1.86 5.14
Shuchazao(v2) 2.94 600.46 2,885,680 167.11 38.25 4,906 17.19 1,086 245 2.55 12.45
Biyun 2.92 625.11 3,909,422 195.68 38.24 6,263 12.55 1,130 251 2.16 7.41
Longjing43 3.26 271.33 2,426,329 143.85 38.67 10,816 10.29 1,205 226 2.3 9.58
Wild tea (DASZ) 3.11 2,589.77 16,813,527 204.21 38.98 8,051 10.61 1,139 212 2.72 10.08
Huangdan 2.94 2,610.56 20,560,000 213.27 38.82 5,452 14.89 1,092 342 2.08 16.16
Tieguanyin 3.06 1,986.56 13,710,000 213.46 38.51 5,651 13.99 1,236 268 2.39 10.17
C.oleifera 3 1,200.00 19,930,000 186.43 40.55 7,215 18.06 1,016 210 2.36 12.45
C.chekiangoleosa 2.73 1,921.46 12,227,748 185.25 39.23 4,596 23.66 1,125 280 2.16 11.53


Related References:

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Wang, X.C. et al. Population sequencing enhances understanding of tea plant evolution. Nature Commounications 11, 4447 (2020).

Zhang, W.Y. et al. Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties. Nature Commounications 11, 3719 (2020).

Zhang, Q.J. et al. The Chromosome-Level Reference Genome of Tea Tree Unveils Recent Bursts of Non-autonomous LTR Retrotransposons in Driving Genome Size Evolution. Molecular Plant 7,

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Sheng, T.F. et al. The reference genome of Camellia chekiangoleosa provides insights into Camellia evolution and tea oil biosynthesis. Horticulture Research uhab083 (2022).

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