Overview
Region Search
Gene information Search
Diversity Estimation
Samples
350 Accessions
295 Cultivars
55 Wild Tea
14 Countries
Diversity
Overview Statistic
SCZ Population
LJ43 Population
TGY Population
Variations
15,417,716 SNPs
950,950 Indels
13.5× Depth
Variation Density
Tools
Variation Search
Quick Diversity Estimation
Diversity Comparison
Note
: please be careful when using the
variation data
from sequencing depth < 10
Search by Region
1. Choose the Datasource
Germplasm:
SCZ Population
TGY Population
LJ43 Population
2. Select the Genomic Regions
Chromsome:
Chr01
Chr02
Chr03
Chr04
Chr05
Chr06
Chr07
Chr08
Chr09
Chr10
Chr11
Chr12
Chr13
Chr14
Chr15
Start:
End:
or
Upload Region List:
Example
Clear
3. Accesions of Interested
Accession:
Example
Clear
4. Filtering Options
Variant Type:
SNP
InDel
Minor Allele Frequency (0-1.0):
Search
Download
Region Search Result:
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1
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Search by Gene
1. Choose the Datasource
Germplasm:
SCZ Population
TGY Population
LJ43 Population
2. Input the Gene Information
Gene ID:
or
Upload Gene List:
Example
Clear
Up(bp):
Down(bp):
3. Accesions of intereted
Accession:
Example
Clear
4. Filtering Options
Variant Type:
SNP
InDel
Minor Allele Frequency (0-1.0):
Calculate
Download
Gene Information Search Result:
page
1
of
