RNA sequencing (RNA-seq) is a cost-effective and ultra-high-throughput sequencing technology that provides an efficient way to measure the whole transcription profile of a given species of interest. Camellia contains many important horticulture plants that are extensively used for making tea, edible oil, and ornamental flowers. In the last decades, increasing studies have launched to generate the transcriptome of Camellia plants at different developmental stages or under various abiotic and/or biotic stress to investigate the genetic basis of secondary metabolites that determine the tea and oil quality. We have examined almost entire available published scientific literatures describing the transcriptome sequencing experiments on tea plant and its closely relatives (as of August, 2023). These data resources freely serve the entire tea research community, and be of significance for the future genetic engineering, functional genomics and population genetic studies in Camellia.

Overview


Overview of the currently released Camellia transcriptomes (as of August 1, 2023).
Organism Cultivar Bud Leaf Flower Seed Stem Root Year Pubmed Desc
Major sequenced tissues
Camellia chekiangoleo COH-----202236344600Details
C. sinensis var. sinensisshuchazao----202032353625Details
C. sinensis var. assamicaYunkang 10201728473262Details
C. sasanqua----201728992542Details
C. sinensis var. sinensisRuixue-----201728844668Details
C. sinensis var. sinensis----201727896431Details
C. sinensis var. sinensis-----201728365842Details
C. oleifera-----201728241790Details
C. sinensis var. sinensisJK2-----201728851890Details
C. sinensis var. sinensisFudingdabaicha, 0306I and Y510----201728515736Details
C. sinensis var. sinensisHuangjinya-----201728596773Details
C. nitidissima-----201728936220Details
C. sinensis var. sinensisLongjing 43----201729037151Details
C. sinensis var. sinensisYabukita--201626686283Details
C. sinensis var. sinensis----201627362295Details
C. sinensis var. sinensis-----201627098524Details
C. sinensis var. sinensisFuding Dabaicha,Zhongcha 108---201627183979Details
C. sinensis var. sinensisLongjingchangye-----201627756219Details
C. sinensis var. sinensisAnji Baicha ----201627609021Details
C. reticulataYB1-2--201626941748Details
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Note: the tissues of Camellia plants used for transcriptome sequencing are colored with green.
Update: 2023-01-10

All assemblies

Functional annotation

EST polymorphic SSR

Transcription Factor

Map to tea plant genome